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NAMD  
 
NAMD
Description 
NAMD is a parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems. It is file-compatible with AMBER, CHARMM and X-PLOR

Official Homepage
      
Documentation
Users Manual
NAMD User Guide

Other References
Mailing List 
Wiki
NAMD Tutorials

License Agreement and Citation Format
License Agreement
NAMD Non-Commercial License

Citation Format 
  1. The NAMD License Agreement specifies that any reports or published results obtained with NAMD shall acknowledge its use and credit the developers as:
    "NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign."
  2. James C. Phillips, Rosemary Braun, Wei Wang, James Gumbart, Emad Tajkhorshid, Elizabeth Villa, Christophe Chipot, Robert D. Skeel, Laxmikant Kale, and Klaus Schulten. Scalable molecular dynamics with NAMD. Journal of Computational Chemistry, 26:1781-1802, 2005.
How to Access the Program 
 
Availability
Servers Versions Paths Parallelization Methods
Fuji 2.7b3 /apps/namd-2.7b3 Charm++
2.7c /apps/namd-2.7c Charm++
       
Aurora 2.7 /apps/NAMD/2.7 Charm++
2.8 /apps/NAMD/2.8  Charm++

     
Axle 2.6 /apps/NAMD/namd-2.6/Linux-amd64-icc  Charm++
2.7 /apps/NAMD/namd-2.7/ibverbs Charm++
2.8b1 /apps/NAMD/NAMD_2.8b1_Linux-x86_64-ibverbs-smp Charm++, SMP
2.8b1 /apps/gpu/NAMD-CUDA/current Charm++, CUDA
Using the Program
 
Additional Notes
 
Last Updated - 5th Oct 2011
 
     
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