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ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.

To assemble transcriptome data, see Trans-ABySS

Official Homepage 
User Manual
An on-line user guide from SEQwiki

Other References
ABySS Google Group
License Agreement and Citation Format
Citation Format
ABySS: A parallel assembler for short read sequence data. Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I. Genome Research, 2009-June. (Genome Research, PubMed)
How to Access the Program 

Servers Versions Paths Parallelization Methods
Aurora 1.2.4 /apps/ABySS/1.2.4 MPI
Axle 1.2.0 /apps/ABYSS/120 MPI
Using the Program

Additional Notes

Last Updated - 4th Oct 2011
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