| |
|
|
|
| |
NAMD
| Description |
NAMD is a parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems. It is file-compatible with AMBER, CHARMM and X-PLOR Official Homepage
|
| Documentation |
Users Manual
NAMD User Guide
Other References
Mailing List
Wiki
NAMD Tutorials
|
| License Agreement and Citation Format |
License Agreement
NAMD Non-Commercial License
Citation Format
- The NAMD License Agreement specifies that any reports or published results obtained with NAMD shall acknowledge its use and credit the developers as:
"NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign."
- James C. Phillips, Rosemary Braun, Wei Wang, James Gumbart, Emad Tajkhorshid, Elizabeth Villa, Christophe Chipot, Robert D. Skeel, Laxmikant Kale, and Klaus Schulten. Scalable molecular dynamics with NAMD. Journal of Computational Chemistry, 26:1781-1802, 2005.
|
| How to Access the Program |
Availability
| Servers |
Versions |
Paths |
Parallelization Methods |
| Fuji |
2.7b3 |
/apps/namd-2.7b3 |
Charm++ |
| 2.7c |
/apps/namd-2.7c |
Charm++ |
| |
|
|
|
| Aurora |
2.7 |
/apps/NAMD/2.7 |
Charm++ |
| 2.8 |
/apps/NAMD/2.8 |
Charm++ |
|
|
|
|
| Axle |
2.6 |
/apps/NAMD/namd-2.6/Linux-amd64-icc |
Charm++ |
| 2.7 |
/apps/NAMD/namd-2.7/ibverbs |
Charm++ |
| 2.8b1 |
/apps/NAMD/NAMD_2.8b1_Linux-x86_64-ibverbs-smp |
Charm++, SMP |
| 2.8b1 |
/apps/gpu/NAMD-CUDA/current |
Charm++, CUDA |
|
| Using the Program |
| |
| Additional Notes |
| |
|
|
Last Updated - 5th Oct 2011 |
|
|
|
